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LATEST EMAIL UPDATE: 24 Aug 2012
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I have updated the FreeSurfer0.8(linux)/csurf(mac)
tarfiles on myrtos, but also put copies in a web-accessible
place (but somewhat hidden):

  http://kamares.ucsd.edu/~sereno/csurf/tarballs/.tmp/

Because of the ".", you shouldn't see it if you go to:

  http://kamares.ucsd.edu/~sereno/csurf/tarballs/

Here are the most recent updates.  The main points
are, handle 512^3, 0.5mm^3 data for making hi-res
surfaces (with 800K vertices!), and calculate complex
avg and complex-F for hand-aligned cross subject
*3D* retinotopy (for pulvinar).

cheers,
marty


### 12/08/24 -- FreeSurfer0.8-120824.tgz, csurf0.8-mac-120824.tgz
[see full list in ../NOTES.txt]
  1) deal with "new quad" (float) surface now made by MGH
  2) tksurfer can finally read and smooth overlay files from command line :-}
  3) cmdline utilities for making surfaces from 512^3 data (lots 'o vertices)
  4) tkmedit can display 512^3, 0.5mm^3 data
  5) interface for tksurfer loading volume data (SHRINK hacking on the way)
  6) brik2cor/cor2brik now read/write correct AFNI HEAD file
  7) fixed bug in ends of color LUT when interpolate *off*
  8) tksurfer read val automatically detects complex data (1click read)
  9) csurf does cross subject complex-valued F-stats for *volume*
 10) csurf/tkmedit auto-reads complex cross subject 3D stats (in sphavg dir)




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UPDATE DETAILS
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### UPDATE (minor bugfix): 28 Aug 2012
--/home/inverse/freesurfer/tarballs/FreeSurfer0.8-120828.tgz
--/home/inverse/freesurfer/tarballs/csurf0.8-mac-120828.tgz
--csurf: fix tkregtargdir var/entry missing for alignscan, if align->no invert
--tkregister.{c,tcl}: harmonize/Mac-ize/usage tk/glx key bindings,help/csurf/reg
--tksurfer.{c,tcl}: harmonize/Mac-ize/usage tk/glx key bindings, help/csurf/surf
--tkmedit.{c,tcl}: harmonize/Mac-ize/usage tk/glx key bindings, help/csurf/med
--help: tkmedit: val,val_read,val_write  csurf: setupsphavg VOLAVG doc

### UPDATE: 24 Aug 2012
--surf.c: -newquad option to write new quad (float) surfaces
--tksurfer.c: {find,select}_orig_vertex_coords OK w/NEW_QUAD_FILE_MAGIC_NUMBER
--tksurfer.c: write trisurf, new/oldquad from div'd-to-tri if undividequadsflag
--tkmedit.c: also read NEW_QUAD surfaces
--tksurfer.c: finally -real/-imag/-stat/-smoothsteps for cmdline load overlay
--tkmedit.c: "tkmedit -f cor/mgz" works, fix Linux tearing: mov win, 1st update
--tkmedit.c: read_images saves mgz headvals in globals, write_images req's read
--tkstrip.c/wmfilter.c/fill.c/tksurfer.c(readonly): same read/write_images fix
--add 3dcopy to included AFNI for convert *.nii to *.BRIK/HEAD
--brik2cor.c: repl orig2cor, gen 512^3/0.5mm^3, read ORIENT_SPECIFIC, trilin/nn
--tkmedit.c in/display/out 512^3
--cor2brik.c conv 512^3 back to BRIK
--calcimg.c in/out 512^3
--tkstrip.c in/out 512^3
--wmfilter.c in/out 512^3
--fill.c in/out 512^3
--surf.c in 512^3
--tksurfer.c: -loadmri1 option requests load this 3D dataset
--csurf: onetime checkbutton right of VOLUME to make SURFACE load selected 3D
--csurf: new hires SubjectTools menu (old+mgz tkstrip/wmfilter/fill/surf)
--csurf: use brik2cor (currently: AFNI align full BRIK only)
--tkregister: accept 512^3, fix old off-edge bug
--tkmedit: working mgz cube check (copy fixed primary/second from tkregister.c)
--mk0: leave otherarch myinstall libs, csurf.tgz to dist, cp arch-specific AFNI
--tksurfer.tcl: val: "R" auto-reads/pushes if complex data (_r,_i or _x,_y)
--tksurfer.tcl: val: "W" auto-write/swaps if complex data (_r,_i or _x,_y)
--csurf/tkregister.c: use/save/edit target-image TR entry on Setup Functscan
--csurf: VOLAVG volume Don complex-F test implemented (on _x,_y only)
--tksurfer.c: fix non-interpolate color LUT ends, fix help (val2rgb,intplut)
--tkmedit.c: -real/-imag in addition to -real/-complex
--tkmedit.c: re-wrire substatpatt: cmdline/intern: _{r,i,m}, interface: onevar
--csurf: tkmedit cmd: use -real/-imag vs. -real/-complex, -substatpatt_{r,i,m}
--csurf: VOLUME-STATS autoloads VOLAVG cross subj subsampled if there
--tkmedit.c: fix offedge cursor crash/1x-fail (maxk2),Linux key1-4 resize redraw
--clean compile of csurfsrc.tgz on myrtos inserted into FreeSurfer0.8